Package: CLME 2.0-12

CLME: Constrained Inference for Linear Mixed Effects Models

Estimation and inference for linear models where some or all of the fixed-effects coefficients are subject to order restrictions. This package uses the robust residual bootstrap methodology for inference, and can handle some structure in the residual variance matrix.

Authors:Casey M. Jelsema [aut, cre], Shyamal D. Peddada [aut]

CLME_2.0-12.tar.gz
CLME_2.0-12.zip(r-4.5)CLME_2.0-12.zip(r-4.4)CLME_2.0-12.zip(r-4.3)
CLME_2.0-12.tgz(r-4.4-any)CLME_2.0-12.tgz(r-4.3-any)
CLME_2.0-12.tar.gz(r-4.5-noble)CLME_2.0-12.tar.gz(r-4.4-noble)
CLME_2.0-12.tgz(r-4.4-emscripten)CLME_2.0-12.tgz(r-4.3-emscripten)
CLME.pdf |CLME.html
CLME/json (API)
NEWS

# Install 'CLME' in R:
install.packages('CLME', repos = c('https://jelsema.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jelsema/clme/issues

Datasets:

On CRAN:

20 exports 2 stars 1.87 score 47 dependencies 5 mentions 38 scripts 280 downloads

Last updated 4 years agofrom:baf9985904. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 28 2024
R-4.5-winNOTEAug 28 2024
R-4.5-linuxNOTEAug 28 2024
R-4.4-winNOTEAug 28 2024
R-4.4-macNOTEAug 28 2024
R-4.3-winNOTEAug 28 2024
R-4.3-macNOTEAug 28 2024

Exports:as.clmeclmeclme_emclme_em_fixedclme_em_mixedclme_residscreate.constraintsfixed.effectsis.clmelrt.statminquemodel_terms_clmerandom.effectsresid_bootshiny_clmeshinyServer_clmeshinyUI_clmeVarCorrw.statw.stat.ind

Dependencies:base64encbootbslibcachemclicommonmarkcrayondigestfastmapfontawesomefsgluehtmltoolshttpuvisotonejquerylibjsonlitelaterlatticelifecyclelme4magrittrMASSMatrixmemoisemimeminqanlmenloptrnnlsopenxlsxprettyRpromisesR6rappdirsRcppRcppEigenrlangsassshinysourcetoolsstringistringrvctrswithrxtablezip

Readme and manuals

Help Manual

Help pageTopics
Constrained inference for linear mixed models.CLME-package CLME
Akaike information criterionAIC.clme AIC.summary.clme
Bayesian information criterionBIC.clme BIC.summary.clme
Constrained Inference for Linear Mixed Effects Modelsclme
Constrained EM algorithm for linear fixed or mixed effects models.clme_em clme_em_fixed clme_em_mixed
Computes various types of residualsclme_resids
Individual confidence intervalsconfint.clme confint.summary.clme
Generate common order constraintscreate.constraints
Fibroid Growth Studyfibroid
Extract fixed effectscoef.clme coef.summary.clme coefficients.clme coefficients.summary.clme fixed.effects fixed.effects.clme fixed.effects.summary.clme fixef.clme fixef.summary.clme
Extract formulaformula.clme
Constructor method for objects S3 class clmeas.clme is.clme
Log-likelihoodlogLik.clme logLik.summary.clme
Likelihood ratio type statistic (global)lrt.stat
MINQUE Algorithmminque
Create model matrices for 'clme'model_terms_clme
Extract the model design matrix.model.matrix.clme model.matrix.summary.clme
Number of observationsnobs.clme nobs.summary.clme
S3 method to plot objects of class 'clme'plot.clme
S3 method to plot objects of class 'clme'plot.summary.clme
Printout of fitted object.print.clme
S3 method to print a summary for objects of class 'clme'print.summary.clme
Printout for variance componentsprint.varcorr_clme
Extract random effectsrandom.effects random.effects.summary.clme
Extract random effectsrandom.effects.clme ranef.clme ranef.summary.clme
Experiment on micerat.blood
Obtain Residual Bootstrapresid_boot
Various types of residualsresiduals.clme residuals.summary.clme
Shiny GUI for CLMEshinyServer_clme shinyUI_clme shiny_clme
Residual variance componentssigma.clme
Residual variance componentssigma.summary.clme
Produce summary values for objects of class 'clme'summary.clme
Variance componentsVarCorr VarCorr.clme VarCorr.summary.clme
Variance-covariance matrixvcov.clme vcov.summary.clme
Williams' Type Test Statistic.w.stat w.stat.ind