Changes in version 2.0-13 (2026-04-06) o Removed dependency on prettyR from summary_clme Changes in version 2.0-11 (2019-02-07) o Removed a default value for seed in summary.clme o Fixed error from setting names to NULL Changes in version 2.0-10 (2018-05-23) o Fixed out-of-sync metadata. o Model now assumes ordred factor for constrained effect. If not, issues warning and attempts to force ordered=TRUE . Changes in version 2.0-9 (2018-02-01) o Fixed error in naming to prevent error with R 3.4.3 Changes in version 2.0-8 (2017-12-08) o Streamlined of formula parsing (less messy). o Fixes to plot.clme() for tree orders. o Fixed error in removing duplicate patterns from auto-generated contraints. o Added option to specify node in shiny_clme. o shiny_clme will produce code used to run the specified model. Changes in version 2.0-5 o Added reference to JSS manuscript: Jelsema and Peddada (2016) Changes in version 2.0-4 (2015-07-13) o Fixed error in logLik.clme. o Changed maintainer email. o Added explicit BIC.clme method (instead of forcing custom use of AIC.clme) o Removed the bootstrap computations from clme() and put them into summary.clme(). o summary.clme() now returns a list of values (largely equivalent to output of clme()) but does not automatically print output to console. o print.summary.clme() prints the output of summary.clme to the console. o Improvements to the shiny_clme() application: o Added "model running" indicator o Enabled tab-delimited and xlsx formatted data input o Multiple tabs for output. Changes in version 2.0-3 o Noted nsim is in the fitted object of clme(). o Fixed error with method VarCorr() (failed unless "lme4" or "nlme" was loaded, redefined method VarCorr) o Replaced vignette with static document. o Implemented work-around to prevent error (stemming from package isotone) when there was only 1 constraint. Changes in version 2.0-2 (2015-01-27) o Fixed typo in printing of log-likelihood, AIC, BIC o Added ellipses to MINQUE function to prevent errors from arguments em.eps and em.iter o Improvements to shiny_clme() application Changes in version 2.0-1 (2014-12-05) o Minor updates to several functions Changes in version 2.0-0 o Major changes to arguments, particularly: o Formula interface implemented o Removed necessity for custom PAVA algorithms (implemented function 'activeSet' from package isotone) o Nks replaced with group vector input o Qs removed, each random term now gets individual variance o Provided more common methods for fitted objects Changes in version 1.0-0 o Initial release of package Author / Maintainer: Casey M. Jelsema Assistant Professor Department of Biostatistics West Virginia University